Linux for Chemistry.

These pages are concerned with the day-to-day use of Linux instead of Windows in the academic environment. Specifically we use Kubuntu, because of this some of the details given here may not be transferable directly to other systems.

Windows Alternatives


AreaLinux Software ReplacingComments
Word Processing
Spreadsheet
Presentations
OpenOffice
LibreOffice
AbiWord word processor
Microsoft Office OpenOffice and LibreOffice are almost direct replacements of MS Office - they will read & save .doc, .ppt, .docx, .pptx etc files (as well as many more formats) and can write pdf directly
LibreOffice is a fork of OpenOffice that appears to be more upto date.
AbiWord is a much leaner, faster, but older, WP for windows XP and Linux.
Email Kontact/Kmail*
Thunderbird
Outlook Thunderbird with the lightning addin (optionally using DavMail) is a complete replacement for Outlook/Exchange Email and Calendar
Web browser Konqueror*
Firefox
Google Chrome
Opera
Internet Explorer All of the main compliant browsers have Linux versions
Bibliographic software Bibus
JabRef
EndNote
Chemical drawings ChemDoodle
Xdrawchem
or IsisDraw under wine
ChemDraw or IsisDraw A good review of the packages available can be found at www.gunda.hu/dprogs
Crystallography A lot of X-ray programs are written for both Windows and Linux systems, including Pluton, Shelx, enCIFer, mercury.
Spectroscopy Many programmes here - if you can't find a Linux version, then use a Windows one under Wine, or VirtualBox (see below). We use SpinWorks mainly for NMR analysis, although if you can get hold of the old version of mestrec it will run under wine. [A newer (commercial) version of mestrec (Mnova) is available which runs directly (not tested by us) under linux.
For IR and Raman Nicolet's Omnic software works under Wine perfectly.
Computational Chemistry Again, many programs are written to run on either Windows, Mac or Linux computers, from desktops to powerful servers. We use Avagadro on individual PCs to prepare data, GAMESS for ab initio calculations, GamessQ for job submission on PCs, and WebMO for submission to our server and wxMacPlt on PCs to view the output of calculations.

* Indicates a component of KDE

Installation of Kubuntu

This is very straight forward now, download the iso image from the Kubuntu download website, write it to a CD or DVD (this will obviously depend on what system you are curently using) and then restart your computer and boot from the CD. You can check things out before installing by running Kubuntu directly from the CD - albeit it slowly. There are numerous guides to doing this, including the Ubuntu guide.

If installing Wine (highly recommended if you are migrating from Windows) then after installing Wine use adept etc to get WineTools - it greatly eases setting up Wine.

A recent find was the truly excellent VirtualBox software of innotek GmbH this can be installed from the Kubuntu package manager (adept etc) and after a reboot it provides a virtual machine into which you can load other operating systems, such as Windows. Below you can find a screendump of a PC running Kubuntu 7.04 and in a window Windows XP - that must be the definition of Windows!

VirtualBox running XP on top of Linux

[Please note that any items indicated by [local access] are restricted to local users only.]

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Tag Cloud
Linux Distributions
Slackware Logo

Slackware is our long-standing favourite, rock solid, Linux distribution. Brilliant for Servers!

Linux Distributions
Kubuntu logo

Kubuntu, the KDE version of Ubuntu is our other favourite, very easy to use, Linux distribution.

Favourite Application
AbiWord logo

Although not as powerful as OpenOffice, Abiword is a great, fast word processor.